Scope evaluator

This tool can be used to compare two scope annotated documents (e.g.: to calculate annotator agreement)
or to evaluate scope marking as contrasted to the BioScope corpus. It supports XML input files in BioScope DTD format. 

The evaluator needs Java 6 Runtime Evironment. 

Basic usage
To run the program, type "java -jar ScopeEval.jar -A <fileA> -B <fileB>" in the command prompt.


Command line arguments
-A <fileA> : (obligatory) set the gold standard xml file
-B <fileB> : (obligatory) set the test xml file
-ES <outFile> : (optional) dump differently annotated lines to outFile
-R  <outFile> : (optional) writes the final report to outFile
-o : (optional) forces the program not to use the standard output (eg.: for the final report)